John f kennedy noaa metadata

- Copy.gitignore

@@ -0,0 +1,5 @@
+#Ignore All
+.
+
+# 
+!/ArcGIS-Analysis-Python

.gitignore

@@ -1,49 +1,5 @@
-# History files
-.Rhistory
-.Rapp.history
-.RDataTmp
+#Ignore All
+.
 
-# Session Data files
-.RData
-
-# User-specific files
-.Ruserdata
-
-# Example code in package build process
-*-Ex.R
-
-# Output files from R CMD build
-/*.tar.gz
-
-# Output files from R CMD check
-/*.Rcheck/
-
-# RStudio files
-.Rproj.user/
-
-# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
-.httr-oauth
-
-# knitr and R markdown default cache directories
-*_cache/
-/cache/
-
-# Temporary files created by R markdown
-*.utf8.md
-*.knit.md
-
-# R Environment Variables
-.Renviron
-
-/data_processing_rcode/data/
-/data_processing_rcode/output/
-/data_processing_rcode/notforgit/
-
-
-/code/.quarto/
-*.zip
-*.tex
-*.log
-*.markdown
-*.rmarkdown
-__init__.py
+# 
+!/ArcGIS-Analysis-Python

.pre-commit-config.yaml

@@ -0,0 +1,23 @@
+# .pre-commit-config.yaml
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.5.0 # Use the latest version
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-yaml
+      - id: check-added-large-files
+      - id: check-json
+      - id: detect-private-key
+#  - repo: https://github.com/psf/black
+#    rev: 24.3.0 # Use the latest version
+#    hooks:
+#      - id: black
+  - repo: https://github.com/PyCQA/flake8
+    rev: 7.0.0 # Use the latest version
+    hooks:
+      - id: flake8
+  - repo: https://github.com/PyCQA/isort
+    rev: 5.13.2 # Use the latest version
+    hooks:
+      - id: isort

ArcGIS-Analysis-Python/ - Copy.gitignore

@@ -0,0 +1,5 @@
+#Ignore All
+.
+
+# 
+!/ArcGIS-Analysis-Python

ArcGIS-Analysis-Python/.gitignore

@@ -1,45 +1,2 @@
-# Global ignore: everything
-*
-
-# allow directories so we can whitelist specific content
-!*/
-
-# Remove selected directories
-.ipynb_checkpoints
-**/.ipynb_checkpoints
-.backups
-__pycache__
-**/__pycache__
-
-
-# include python files anywhere
-!*.py
-!*.pyt
-!**/*.py
-!**/*.pyt
-
-# still ignore py backup variants
-*.~py
-**/*.~py
-# ignore Python init files globally
-__init__.py
-**/__init__.py
-
-# include Scripts folder and its contents
-!Scripts/
-!Scripts/**
-
-# include README files in root, Scripts, and dismap_tools
-!README.md
-!Scripts/README.md
-!src/dismap_tools/README.md
-
-# Notebook folder and its notebooks
-Notebook/**
-*/secure/**
-**/secure/**
-user_credentials.py
-**/user_credentials.py
-
-# explicitly exclude esri folder under dismap_tools
-src/dismap_tools/esri/
+#Ignore All
+.

ArcGIS-Analysis-Python/.pre-commit-config.yaml

@@ -0,0 +1,23 @@
+# .pre-commit-config.yaml
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.5.0 # Use the latest version
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-yaml
+      - id: check-added-large-files
+      - id: check-json
+      - id: detect-private-key
+#  - repo: https://github.com/psf/black
+#    rev: 24.3.0 # Use the latest version
+#    hooks:
+#      - id: black
+  - repo: https://github.com/PyCQA/flake8
+    rev: 7.0.0 # Use the latest version
+    hooks:
+      - id: flake8
+  - repo: https://github.com/PyCQA/isort
+    rev: 5.13.2 # Use the latest version
+    hooks:
+      - id: isort

ArcGIS-Analysis-Python/README.md

@@ -1,7 +1,7 @@
 # DisMAP ArcGIS Pro Analysis using Python
 > This code is always in development. Find the code used for various reports in the code [releases](https://github.com/nmfs-fish-tools/DisMAP/releases).
 
-#### Explanation of this Folder 
+#### Explanation of this Folder
 
 This folder is part of the overall DisMAP repository and inparticular the ArcGIS Python Process fork. The "src" folder coontains a folder called "dismap_tools", which contains the set of Python scripts to process raw data into other datasets and eventually the interpolated biomass rasters.
 
@@ -11,7 +11,7 @@ If you see that the data, product, or metadata can be improved, you are invited
 
 #### NOAA-NMFS GitHub Enterprise Disclaimer
 
-This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an ‘as is’ basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. 
+This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an ‘as is’ basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce.
 The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.
 
 #### NOAA License