debug annotation order

[will-moore]

TEMP PR to debug #684 on merge-ci

[will-moore]

Looking for changes from #684 in the code running on omero-web merge-ci...

The last commit on scc merge-ci at snoopycrimecop@d9e4341

has:

Merged PRs:
  - PR 602 Tom-TBT 'Inherit all annotations'
  - PR 604 will-moore 'Right panel perf'
  - PR 643 will-moore 'Don't disable the histogram for big images'
  - PR 644 jo-mueller 'Add some install instructions for windows'
  - PR 677 will-moore 'Add table_histogram endpoint'
  - PR 682 will-moore 'Initial support for JSON api /annotations endpoint'
  - PR 684 JoshuaFortriede 'add config "omero.web.annotation_order"'
  - PR 685 will-moore 'Prepare chgrp 'update' response before chgrp submission'
  - PR 686 will-moore 'debug annotation order'

showing that both THIS PR and #684 are merged.

Connect to merge-ci...

ssh 10.0.48.11
sudo su
docker exec -it devspace-web-1 bash
source /home/omero/workspace/OMERO-web/.venv3/bin/activate
$ python
Python 3.11.13 (main, Jun  1 2026, 00:00:00) [GCC 11.5.0 20240719 (Red Hat 11.5.0-14)] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import omeroweb
>>> omeroweb.__file__
'/home/omero/workspace/OMERO-web/.venv3/lib64/python3.11/site-packages/omeroweb/__init__.py'

Now we check the omeroweb/settings.py file for "annotation_order" (finds nothing)

$ grep "omero.web.annotation_order" /home/omero/workspace/OMERO-web/.venv3/lib64/python3.11/site-packages/omeroweb/settings.py

We use the following line and include 10 lines before and after shows that changes in https://github.com/ome/omero-web/pull/684/changes are clearly missing

$ grep "omero.web.ui.top_links" /home/omero/workspace/OMERO-web/.venv3/lib64/python3.11/site-packages/omeroweb/settings.py -A 10 -B 10
    ],
    "omero.web.search.default_group": [
        "SEARCH_DEFAULT_GROUP",
        0,
        int,
        (
            "ID of the group to pre-select in search form. "
            "A value of 0 or -1 pre-selects All groups."
        ),
    ],
    "omero.web.ui.top_links": [
        "TOP_LINKS",
        (
            "["
            '["Data", "webindex", {"title": "Browse Data via Projects, Tags'
            ' etc"}],'
            '["History", "history", {"title": "History"}],'
            '["Help", "https://help.openmicroscopy.org/",'
            '{"title":"Open OMERO user guide in a new tab", "target":"new"}]'
            "]"
        ),

Let's check the contents of zips...

$ pwd
/home/omero/workspace/OMERO-web
$ mkdir omero_web_unzipped
$ tar -xzf omero_web-5.32.1.dev0.tar.gz --directory omero_web_unzipped/
$ cd omero_web_unzipped/omero_web-5.32.1.dev0
$ pwd
/home/omero/workspace/OMERO-web/omero_web_unzipped/omero_web-5.32.1.dev0

$ grep "omero.web.ui.top_links" omeroweb/settings.py -A 10 -B 10
    "omero.web.annotation_order": [
        "ANNOTATION_ORDER",
        "namespace",
        parse_annotation_order,
        (
            "Controls annotation ordering. "
            "Allowed values are 'namespace', 'date', or a JSON list "
            "of namespaces defining a custom order"
        ),
    ],
    "omero.web.ui.top_links": [
        "TOP_LINKS",
        (
            "["
            '["Data", "webindex", {"title": "Browse Data via Projects, Tags'
            ' etc"}],'
            '["History", "history", {"title": "History"}],'
            '["Help", "https://help.openmicroscopy.org/",'
            '{"title":"Open OMERO user guide in a new tab", "target":"new"}]'
            "]"
        ),

So, the /home/omero/workspace/OMERO-web/omero_web-5.32.1.dev0.tar.gz DOES have the changes.

[will-moore]

@pwalczysko AFAICT, None of the "merged PRs" above are included in merge-ci.

E.g. #682 should show additional URLs on the https://merge-ci.openmicroscopy.org/web/api/v0/ page, but they're missing.
#602 should show parent annotations (e.g. ratings, tags etc), but I'm not seeing any.

[will-moore]

Fixed it!

In the logs at https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-web/66/consoleFull we see:

03:08:01 Successfully built omero-web
03:08:02 Installing collected packages: omero-web
03:08:02   Attempting uninstall: omero-web
03:08:02     Found existing installation: omero-web 5.33.0
03:08:04     Uninstalling omero-web-5.33.0:
03:08:04       Successfully uninstalled omero-web-5.33.0
03:08:14 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
03:08:14 omero-iviewer 0.18.0.dev0 requires omero-web>=5.33.0, but you have omero-web 5.32.1.dev0 which is incompatible.
03:08:14 Successfully installed omero-web-5.32.1.dev0

and later:

03:13:21 Processing ./omero_iviewer-0.18.0.dev0.tar.gz
03:13:22   Installing build dependencies: started
03:13:31   Installing build dependencies: finished with status 'done'
03:13:31   Getting requirements to build wheel: started
03:13:31   Getting requirements to build wheel: finished with status 'done'
03:13:31   Preparing metadata (pyproject.toml): started
03:13:32   Preparing metadata (pyproject.toml): finished with status 'done'
03:13:32 Collecting omero-web>=5.33.0 (from omero-iviewer==0.18.0.dev0)
03:13:32   Using cached omero_web-5.33.0-py3-none-any.whl.metadata (8.2 kB)
...
03:14:07 Installing collected packages: omero-web, omero-iviewer
03:14:07   Attempting uninstall: omero-web
03:14:07     Found existing installation: omero-web 5.32.1.dev0
03:14:07     Uninstalling omero-web-5.32.1.dev0:
03:14:07       Successfully uninstalled omero-web-5.32.1.dev0
03:14:07   Attempting uninstall: omero-iviewer
03:14:07     Found existing installation: omero-iviewer 0.18.0.dev0
03:14:07     Uninstalling omero-iviewer-0.18.0.dev0:
03:14:07       Successfully uninstalled omero-iviewer-0.18.0.dev0
03:14:07 
03:14:07 Successfully installed omero-iviewer-0.18.0.dev0 omero-web-5.33.0

So, because iviewer PR ome/omero-iviewer#563 bumped it's requirement for omero-web 5.33.0 AND the 5.33.0 tag and version omero-web==5.33.1.dev0 hadn't been pushed, the omero-web build still had older 5.32.1.dev0 version and this was uninstalled and replaced with the last release of omero-web-5.33.0.