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Increase anymed time period to May 2026 #71

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Merged
viv3ckj merged 2 commits into from
Jun 12, 2026
+33 −33
Merged

Increase anymed time period to May 2026 #71

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9ae3455
Increase anymed time period to May 2026
viv3ckj Jun 12, 2026
bfad7d1
Comment out excess script
viv3ckj Jun 12, 2026
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2 changes: 1 addition & 1 deletion analysis/dataset_definition_med_status_data_development.py
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Original file line number Diff line number Diff line change
Expand Up @@ -89,7 +89,7 @@
# Post launch, any medication
selected_medications_any_post = medications.where(
medications.date.is_on_or_between(
pharmacy_first_launch_date, pharmacy_first_launch_date + time_interval
pharmacy_first_launch_date, pharmacy_first_launch_date + pf_period
)
).sort_by(medications.date)

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64 changes: 32 additions & 32 deletions project.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@ expectations:
population_size: 1000

actions:
generate_pf_codes_data_development:
run: >
ehrql:v1 generate-dataset analysis/dataset_definition_pf_data_development.py
--test-data-file analysis/test_dataset_definition_pf_data_development.py
--output output/data_development/pf_codes_data_development.arrow
outputs:
highly_sensitive:
dataset: output/data_development/pf_codes_data_development.arrow
# generate_pf_codes_data_development:
# run: >
# ehrql:v1 generate-dataset analysis/dataset_definition_pf_data_development.py
# --test-data-file analysis/test_dataset_definition_pf_data_development.py
# --output output/data_development/pf_codes_data_development.arrow
# outputs:
# highly_sensitive:
# dataset: output/data_development/pf_codes_data_development.arrow

generate_med_status_data_development:
run: >
Expand Down Expand Up @@ -51,33 +51,33 @@ actions:
moderately_sensitive:
dataset: output/data_development/med_status_counts.csv

data_development_pf_code_distinct:
run: r:latest analysis/data_development_pf_code_count_distinct.R
needs: [generate_pf_codes_data_development]
outputs:
moderately_sensitive:
dataset: output/data_development/pf_codes_count_distinct.csv
# data_development_pf_code_distinct:
# run: r:latest analysis/data_development_pf_code_count_distinct.R
# needs: [generate_pf_codes_data_development]
# outputs:
# moderately_sensitive:
# dataset: output/data_development/pf_codes_count_distinct.csv

data_development_pf_code_events:
run: r:latest analysis/data_development_pf_code_count_events.R
needs: [generate_pf_codes_data_development]
outputs:
moderately_sensitive:
dataset: output/data_development/pf_codes_count_events.csv
# data_development_pf_code_events:
# run: r:latest analysis/data_development_pf_code_count_events.R
# needs: [generate_pf_codes_data_development]
# outputs:
# moderately_sensitive:
# dataset: output/data_development/pf_codes_count_events.csv

data_development_pf_codes_pathways:
run: r:latest analysis/data_development_pf_code_count_pathways.R
needs: [generate_pf_codes_data_development]
outputs:
moderately_sensitive:
dataset: output/data_development/pf_codes_count_pathways.csv
# data_development_pf_codes_pathways:
# run: r:latest analysis/data_development_pf_code_count_pathways.R
# needs: [generate_pf_codes_data_development]
# outputs:
# moderately_sensitive:
# dataset: output/data_development/pf_codes_count_pathways.csv

data_development_pf_codes_combine:
run: r:latest analysis/data_development_pf_code_count_combine.R
needs: [data_development_pf_code_distinct, data_development_pf_code_events, data_development_pf_codes_pathways]
outputs:
moderately_sensitive:
dataset: output/data_development/pf_codes_count_summary.csv
# data_development_pf_codes_combine:
# run: r:latest analysis/data_development_pf_code_count_combine.R
# needs: [data_development_pf_code_distinct, data_development_pf_code_events, data_development_pf_codes_pathways]
# outputs:
# moderately_sensitive:
# dataset: output/data_development/pf_codes_count_summary.csv

generate_pf_med_counts_measures:
run: >
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