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Add standalone command-line version - #2

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EllBaum wants to merge 1 commit into
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EllBaum:add-standalone
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Add standalone command-line version#2
EllBaum wants to merge 1 commit into
orenavram:masterfrom
EllBaum:add-standalone

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@EllBaum

@EllBaum EllBaum commented Sep 7, 2026

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This PR adds a standalone command-line version of SINCOPA under standalone/.

Includes:

  • Python analysis scripts (sincopa.py and supporting modules), augmented for local use
  • Pre-compiled Linux x86-64 binaries (MPreconstruct, removeTaxa)
  • conda environment file (environment.yml)
  • Example test data
  • README with installation and usage instructions

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