release-v1.6.1

.github/workflows/azure-deploy.yml

@@ -1,70 +1,72 @@
+---
 name: Deploy to Azure App Service
 
 on:
-    push:
-        branches:
-            - master
-            # - release-*
-    workflow_dispatch: #Allow manual triggers
+  push:
+    branches:
+      - master
+      # - release-*
+  workflow_dispatch:  # Allow manual triggers
 
 permissions:
-    contents: read
-    
+  contents: read
+
 jobs:
-    build-and-test:
-        name: Build and Test
-        runs-on: ubuntu-latest
+  build-and-test:
+    name: Build and Test
+    runs-on: ubuntu-latest
 
-        steps:
-            - name: Checkout code
-              uses: actions/checkout@v4
-              with:
-                submodules: recursive # Include cdisc-json-validation submodule
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          submodules: recursive  # Include cdisc-json-validation submodule
 
-            - name: Set up Python 3.13
-              uses: actions/setup-python@v5
-              with:
-                python-version: '3.13'
-                cache: 'pip'
-                cache-dependency-path: |
-                    pyproject.toml
-                    requirements.txt
+      - name: Set up Python 3.13
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.13"
+          cache: "pip"
+          cache-dependency-path: |
+            pyproject.toml
+            requirements.txt
 
-            - name: Install dependencies
-              run: |
-                python -m pip install --upgrade pip
-                pip install -e ".[dev]"
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -e ".[dev]"
 
-            - name: Run tests
-              run: |
-                pytest -q tests --disable-warnings --tb=short
-              env:
-                CDISC_CONCEPTS_JSON: '[]' # Bypass CDISC API for tests
+      - name: Run tests
+        run: |
+          pytest -q tests --disable-warnings --tb=short
+        env:
+          CDISC_CONCEPTS_JSON: "[]"  # Bypass CDISC API for tests
 
-            - name: Create deployment package
-              run: |
-                # Nothing special needed - Azure will handle pip install
-                echo "Build successful"
+      - name: Create deployment package
+        run: |
+          # Nothing special needed - Azure will handle pip install
+          echo "Build successful"
 
-    deploy:
-        name: Deploy to Azure
-        needs: build-and-test
-        runs-on: ubuntu-latest
-        environment: production     # Optional: requires manual approval
+  deploy:
+    name: Deploy to Azure
+    needs: build-and-test
+    runs-on: ubuntu-latest
+    environment: production  # Optional: requires manual approval
 
-        steps:
-            - name: Checkout code
-              uses: actions/checkout@v4
-              with:
-                submodules: recursive
-            - name: Deploy to Azure Web App
-              uses: azure/webapps-deploy@v2
-              with:
-                app-name: ${{ secrets.AZURE_WEBAPP_NAME }}
-                publish-profile: ${{ secrets.AZURE_WEBAPP_PUBLISH_PROFILE }}
-                package: .
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          submodules: recursive
+      - name: Deploy to Azure Web App
+        uses: azure/webapps-deploy@v2
+        with:
+          app-name: ${{ secrets.AZURE_WEBAPP_NAME }}
+          publish-profile: ${{ secrets.AZURE_WEBAPP_PUBLISH_PROFILE }}
+          package: .
 
-            - name: Verify deployment
-              run: |
-                echo "Deployment complete!"
-                echo "App URL: https://${{ secrets.AZURE_WEBAPP_NAME }}.azurewebsites.net"
+      - name: Verify deployment
+        run: |
+          echo "Deployment complete!"
+          echo "App URL:
+            https://${{ secrets.AZURE_WEBAPP_NAME }}.azurewebsites.net"

.github/workflows/ci.yml

@@ -1,11 +1,12 @@
-# yaml-language-server: $schema=https://json.schemastore.org/github-workflow.json
+# yaml-language-server: 
+# $schema=https://json.schemastore.org/github-workflow.json
 name: CI (Python)
 
 on:
   push:
-    branches: [ "master" ]
+    branches: ["master"]
   pull_request:
-    branches: [ "master" ]
+    branches: ["master"]
 
 permissions:
   contents: read
@@ -21,7 +22,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: [ "3.11", "3.12", "3.13", "3.14" ]
+        python-version: ["3.11", "3.12", "3.13", "3.14"]
 
     steps:
       - name: Checkout
@@ -62,4 +63,4 @@ jobs:
         with:
           name: test-reports-py${{ matrix.python-version }}
           path: reports/
-          if-no-files-found: ignore
+          if-no-files-found: ignore

.github/workflows/claude-changelog.yml

@@ -0,0 +1,58 @@
+---
+name: Generate Changelog
+
+on:
+  push:
+    tags:
+      - 'release-v*'
+
+jobs:
+  changelog:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Get commits since last tag
+        id: commits
+        run: |
+          PREVIOUS_TAG=$(git describe --tags
+            --abbrev=0 HEAD^ 2>/dev/null || echo "")
+          if [ -n "$PREVIOUS_TAG" ]; then
+            COMMITS=$(git log ${PREVIOUS_TAG}..HEAD --oneline)
+          else
+            COMMITS=$(git log --oneline -20)
+          fi
+          echo "commits<<EOF" >> $GITHUB_OUTPUT
+          echo "$COMMITS" >> $GITHUB_OUTPUT
+          echo "EOF" >> $GITHUB_OUTPUT
+
+      - name: Generate changelog with Claude
+        uses: anthropics/claude-code-action@v1
+        with:
+          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          prompt: |
+            Generate a changelog for release ${{ github.ref_name }}.
+
+            Commits since last release:
+            ${{ steps.commits.outputs.commits }}
+
+            Format:
+            ## What's New in ${{ github.ref_name }}
+
+            ### Features
+            - ...
+
+            ### Bug Fixes
+            - ...
+
+            ### Breaking Changes
+            - ... (only if any)
+
+            Write the changelog to CHANGELOG.md (prepared before existing
+              content).
+            Then commit and push the updated CHANGELOG.md.

.github/workflows/claude-comment-review.yml

@@ -1,3 +1,4 @@
+---
 name: Claude PR Comment Review
 
 on:
@@ -9,6 +10,7 @@ on:
 permissions:
     contents: read
     pull-requests: write
+    id-token: write
 
 jobs:
     review:
@@ -18,15 +20,16 @@ jobs:
                 github.event.pull_request != null) }}
         runs-on: ubuntu-latest
         steps:
-            -   name: Checkout
-                uses:  actions/checkout@v4
+            - name: Checkout
+              uses: actions/checkout@v4
 
-            -   name: Run Claude Code Action (comment-triggered)
-                uses: anthropics/claude-code-action@v1
-                with:
-                    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY}}
-                    prompt: |
-                        You are reviewing a GitHub Pull Request. Focus on security, correctness, clarity.
-                        - Only comment on files that changed in this PR.
-                        - Prioritize actionable fixes and cite specific lines.
-                        - Keep comments concise; avoid restating code.
+            - name: Run Claude Code Action (comment-triggered)
+              uses: anthropics/claude-code-action@v1
+              with:
+                  anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY}}
+                  prompt: |
+                      You are reviewing a GitHub Pull Request. Focus on
+                      security, correctness, clarity.
+                      - Only comment on files that changed in this PR.
+                      - Prioritize actionable fixes and cite specific lines.
+                      - Keep comments concise; avoid restating code.

.github/workflows/claude-review.yml

@@ -0,0 +1,34 @@
+---
+name: Claude Code Review
+
+on:
+  pull_request:
+    types: [opened, synchronize, reopened]
+
+permissions:
+  contents: read
+  pull-requests: write
+  id-token: write
+
+jobs:
+  claude-review:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0 # Full history needed for diff analysis
+
+      - name: Claude Code claude-review
+        uses: anthropics/claude-code-action@v1
+        with:
+          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
+          prompt: |
+            Review this pull request and post inline comments for:
+            1. Logic errors and edge cases
+            2. Security vulnerabilities (SQL injection, XSS, auth bypasses)
+            3. Performance issues (N+1 queries, blocking calls, memory leaks)
+            4. Missing error handling
+            5. Missing unit tests
+            6. Non conformance with USDM v4.0 schema (schema/dataStructure.yml)
+            Focus on changed files only, Be specific - cite line numbers

.github/workflows/claude-test-analysis.yml

@@ -0,0 +1,40 @@
+---
+name: Claude Anaylze Test Failures
+
+on:
+  workflow_run:
+    workflows: ["Tests"]
+    types: [completed]
+
+jobs:
+  analyze:
+    if: ${{ github.event.workflow_run.conclusion == 'failure' }}
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      issues: write
+      pull-requests: write
+      id-token: write
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Download test artifacts
+        uses: actions/download-artifact@v4
+        with:
+          name: test-results
+          run-id: ${{ github.event.workflow_run.id }}
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Analyze with Claude
+        uses: anthropics/claude-code-action@v1
+        with:
+          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          prompt: |
+            Tests failed on the latest push.
+            Analyze the failures and:
+            1. Identify the root cause (not just which test failed)
+            2. Point to the specific file and line that likely caused it
+            3. Suggest a fix or investigation path
+
+            Post this as a comment on the PR that triggered these tests.