Migrate rarefaction onto the structurer + SDK upgrade

[vadimpiven]

Migrates rarefaction onto the block-tools structurer and bumps the SDK to latest.

Note: already on BlockModelV3 (BlockModelV3.create + DataModelBuilder + defineAppV3), so no model-V3 migration — structurer layout adoption + SDK-version bump only.

Commits

1. chore: structurer refresh + SDK upgrade — tool-managed layout (oxlint/oxfmt, ts-builder, regenerated configs across model, ui, workflow, block, software, test). SDK → model/ui-vue 1.79.15, workflow-tengo 6.6.3, tengo-builder 3.0.0→4.0.9 (3→4), block-tools 2.11.1. Removes the empty placeholder test/src/wf.test.ts and orphaned model/ui vitest.config.mts.
2. chore: changeset — patch on model, ui, workflow, software; root auto-patches. No block behavior change.

Graphs/table

Unchanged — keeps the hand-rolled <GraphMaker> (graph page) and createPlDataTableV2 table; no plugin.

Verification

pnpm build:dev + check + pnpm test all green (turbo 10/10). Changeset validated.

CI workflows left identical to main (unrelated structurer drift).

Greptile Summary

This PR migrates the rarefaction block onto the block-tools structurer (tool-managed layout) and bumps the SDK stack to latest. No block logic was changed — all functional code (BlockModelV3, DataModelBuilder, workflow, UI) is byte-for-byte equivalent after quote-style normalization by oxfmt.

• Structurer layout: oxlint/oxfmt configs regenerated across all workspaces; eslint-config removed in favour of ts-builder check; vitest.config files regenerated; model/vitest.config.mts and the empty placeholder test/src/wf.test.ts deleted.
• SDK bumps: @platforma-sdk/model/ui-vue/test 1.77→1.79.15, workflow-tengo 5.25→6.6.3, tengo-builder 3.0→4.0.9 (major version), block-tools 2.8→2.11.1; block/index.js now exports a real blockSpec object (replacing the empty stub).
• Build pipeline: turbo.json gains fmt/check tasks; build now declares check as a dependency; --env-mode=loose removed from the root test script, tightening env-var passthrough to the explicit passThroughEnv list.

Confidence Score: 4/5

Safe to merge. All changes are mechanical structurer-layout adoption and SDK version bumps with no block logic altered.

The migration is faithful — every source file change is quote-style normalization or config regeneration, and the functional code paths in the model, UI, and workflow are unchanged. The only non-trivial delta is block/index.js now exporting a real blockSpec and the major-version SDK bumps (tengo-builder 3 to 4, workflow-tengo 5 to 6), which are intentional and confirmed green by CI. The one remaining rough edge is the workflow/package.json do-pack script still using bare rm/mv rather than shx, which is inconsistent with the rest of the migration but does not affect runtime behavior.

workflow/package.json — do-pack script uses bare rm/mv while shx is available.

Important Files Changed

Filename	Overview
block/index.js	Now exports a real blockSpec object (type: "dev-v2", folder: __dirname) as CJS instead of the empty ESM stub; matching .d.ts updated accordingly.
model/src/index.ts	Quote-style normalization only (single → double quotes); no logic change to BlockModelV3 pipeline, outputs, or DataModelBuilder.
model/package.json	Adds module field and CJS main for dual-build; broadens exports["./dist/*"] wildcard; removes eslint-config/vitest devDeps in favour of ts-builder; typescript/@types/node moved to peerDeps.
workflow/package.json	Adds shx and @platforma-sdk/test devDeps; upgrades tengo-builder 3→4 and workflow-tengo 5→6 (both major). do-pack still uses bare rm/mv instead of shx.
turbo.json	Adds fmt and check tasks; build now depends on check (linting gate before build); test loses --env-mode=loose, tightening env-var scope to the explicit passThroughEnv list.
test/src/wf.test.ts	Deleted — was an empty placeholder; vitest is configured with --passWithNoTests so the test task still passes.
pnpm-lock.yaml	Lockfile regenerated; major SDK bumps resolved correctly (tengo-builder 3→4, workflow-tengo 5→6, model/ui-vue/test 1.77→1.79.15); new packages (shx, oxfmt, oxlint, better-sqlite3, inquirer suite) pulled in transitively.
block/package.json	rm replaced by shx rm in build/do-pack; shx added to devDeps; packageManager field moved; dependency order alphabetised.

Flowchart

%%{init: {'theme': 'neutral'}}%%
flowchart TD
    A[pnpm build:dev] --> B[turbo run build]
    B --> C{per workspace}
    C --> D[check\nts-builder check]
    D --> E[build\nts-builder build / pl-tengo build]
    E --> F[block-tools build-model\nmodel only]

    G[pnpm check] --> H[turbo run check]
    H --> D

    I[pnpm fmt] --> J[turbo run fmt\nts-builder format / oxfmt]

    K[pnpm test] --> L[turbo run test\n--concurrency 1]
    L --> M[dependsOn: build + check]
    M --> N[vitest run --passWithNoTests]

    style D fill:#f9c,stroke:#c99
    style E fill:#9cf,stroke:#99c
    style N fill:#cfc,stroke:#9c9

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%%{init: {'theme': 'base', 'themeVariables': {"darkMode": true, "background": "#0d1117", "primaryColor": "#21262d", "primaryTextColor": "#e6edf3", "primaryBorderColor": "#8b949e", "lineColor": "#8b949e", "textColor": "#e6edf3", "edgeLabelBackground": "#161b22", "actorBkg": "#21262d", "actorBorder": "#8b949e", "actorTextColor": "#e6edf3", "actorLineColor": "#8b949e", "signalColor": "#8b949e", "signalTextColor": "#e6edf3", "noteBkgColor": "#373320", "noteBorderColor": "#d4a72c", "noteTextColor": "#f0e6c0", "labelBoxBkgColor": "#21262d", "labelBoxBorderColor": "#8b949e", "labelTextColor": "#e6edf3", "loopTextColor": "#e6edf3", "activationBkgColor": "#30363d", "activationBorderColor": "#8b949e"}}}%%
flowchart TD
    A[pnpm build:dev] --> B[turbo run build]
    B --> C{per workspace}
    C --> D[check\nts-builder check]
    D --> E[build\nts-builder build / pl-tengo build]
    E --> F[block-tools build-model\nmodel only]

    G[pnpm check] --> H[turbo run check]
    H --> D

    I[pnpm fmt] --> J[turbo run fmt\nts-builder format / oxfmt]

    K[pnpm test] --> L[turbo run test\n--concurrency 1]
    L --> M[dependsOn: build + check]
    M --> N[vitest run --passWithNoTests]

    style D fill:#f9c,stroke:#c99
    style E fill:#9cf,stroke:#99c
    style N fill:#cfc,stroke:#9c9

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Prompt To Fix All With AI

Fix the following 1 code review issue. Work through them one at a time, proposing concise fixes.

---

### Issue 1 of 1
workflow/package.json:9
The `do-pack` script uses bare `rm` and `mv` shell commands while the `build` script already uses `shx rm -rf dist`. On Windows, `rm` and `mv` are not available, so `do-pack` would fail where `build` succeeds. Apply `shx` consistently.

```suggestion
    "do-pack": "shx rm -f *.tgz && pnpm pack && shx mv *.tgz package.tgz",
```

_{Reviews (1): Last reviewed commit: "chore: add changeset for structurer migr..." | Re-trigger Greptile}

Greptile also left 1 inline comment on this PR.

[gemini-code-assist]

Code Review

This pull request migrates the repository to the block-tools structurer, which involves updating configurations for linting and formatting (oxlint/oxfmt), reorganizing package scripts to use ts-builder, and bumping the Platforma SDK packages to their latest versions. Feedback on these changes suggests updating the do-pack script in workflow/package.json to use shx instead of native rm and mv commands to ensure cross-platform compatibility.

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