Radmeth performance and threads#279

Merged

andrewdavidsmith merged 24 commits intomasterfrom

radmeth-speedups

Jul 22, 2025

Commits on Jul 21, 2025

Makefile.am: adding radmeth_model.cpp to sources
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src/analysis/nanopore.cpp: removing a debug variable
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src/radmeth/radmeth_optimize.cpp: major rewrite for speed within the existing approach via general optmizers
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src/radmeth/radmeth_model.cpp: adding the radmeth_model.cpp source file
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src/radmeth/radmeth_model.hpp: cleanup and adding some functions to help with organization and efficiency
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src/radmeth/radmeth.cpp: using multi-threaded
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src/radmeth/radmeth.cpp: removing some accidental code..
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src/radmeth/radmeth_optimize.hcpp: fixing includes
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src/radmeth/radmeth.cpp: changing strategies for parallelism to get chunks of data for each thread and avoid too much thread creation. Currently performance has problems.
andrewdavidsmith
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Commits on Jul 22, 2025