Statistical Genomics Analysis, 2023-2024

Course website at https://statomics.github.io/SGA/.

Name		Name	Last commit message	Last commit date
.Rproj.user		.Rproj.user
.github		.github
docs		docs
figs		figs
figures		figures
images_sequencing		images_sequencing
rmdBub		rmdBub
.DS_Store		.DS_Store
.RData		.RData
.Rhistory		.Rhistory
.Rprofile		.Rprofile
.gitignore		.gitignore
README.md		README.md
TargetDecoy.Rmd		TargetDecoy.Rmd
TargetDecoyTutorial.Rmd		TargetDecoyTutorial.Rmd
_session-info.Rmd		_session-info.Rmd
_site.yml		_site.yml
about.Rmd		about.Rmd
airway.rmd		airway.rmd
airwayMapping.Rmd		airwayMapping.Rmd
airway_salmon_edgeR.Rmd		airway_salmon_edgeR.Rmd
bibliography.bib		bibliography.bib
cancer3x3.Rmd		cancer3x3.Rmd
cancer6x6.Rmd		cancer6x6.Rmd
cancer9x9.Rmd		cancer9x9.Rmd
cptac_maxLFQ.Rmd		cptac_maxLFQ.Rmd
cptac_median.Rmd		cptac_median.Rmd
cptac_robust.Rmd		cptac_robust.Rmd
cptac_robust_gui.Rmd		cptac_robust_gui.Rmd
elegansAlignmentCountTable.Rmd		elegansAlignmentCountTable.Rmd
elegansDE.Rmd		elegansDE.Rmd
fastQfiles.txt		fastQfiles.txt
figures.tar.gz		figures.tar.gz
footer.html		footer.html
francisellaMixedModel.Rmd		francisellaMixedModel.Rmd
heartMainInteraction.Rmd		heartMainInteraction.Rmd
heartMainInteraction_HW_otherEncoding.Rmd		heartMainInteraction_HW_otherEncoding.Rmd
index.Rmd		index.Rmd
install.R		install.R
intro.Rmd		intro.Rmd
msqrob2.bib		msqrob2.bib
multipleRegression_KPNA2.Rmd		multipleRegression_KPNA2.Rmd
mzIDMsgfSwissprotExample.Rmd		mzIDMsgfSwissprotExample.Rmd
mzIDswissprotTutorial.Rmd		mzIDswissprotTutorial.Rmd
mzIDuniprotTutorial.Rmd		mzIDuniprotTutorial.Rmd
parathyroid.Rmd		parathyroid.Rmd
pda_blocking_wrapup.Rmd		pda_blocking_wrapup.Rmd
pda_quantification_inference.Rmd		pda_quantification_inference.Rmd
pda_quantification_preprocessing.Rmd		pda_quantification_preprocessing.Rmd
pda_robustSummarisation_peptideModels.Rmd		pda_robustSummarisation_peptideModels.Rmd
pda_technicalDetails.Rmd		pda_technicalDetails.Rmd
pda_tutorialDesign.Rmd		pda_tutorialDesign.Rmd
pda_tutorialPreprocessing.Rmd		pda_tutorialPreprocessing.Rmd
quasiLikelihood.Rmd		quasiLikelihood.Rmd
recapGeneralLinearModel.Rmd		recapGeneralLinearModel.Rmd
scRNA-seq-Tutorial.Rmd		scRNA-seq-Tutorial.Rmd
sequencingTutorial1_mapping.Rmd		sequencingTutorial1_mapping.Rmd
sequencingTutorial2_DE.Rmd		sequencingTutorial2_DE.Rmd
sequencingTutorial3_DE.Rmd		sequencingTutorial3_DE.Rmd
sequencing_countData.Rmd		sequencing_countData.Rmd
sequencing_intro.Rmd		sequencing_intro.Rmd
sequencing_singleCell.Rmd		sequencing_singleCell.Rmd
sequencing_technicalDE.Rmd		sequencing_technicalDE.Rmd
singleCell_MacoskoWorkflow.Rmd		singleCell_MacoskoWorkflow.Rmd
singleCell_MacoskoWorkflow_blank.Rmd		singleCell_MacoskoWorkflow_blank.Rmd
style.css		style.css
tmtMixedModel.Rmd		tmtMixedModel.Rmd

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