Dotfiles

Clone into ~/dev/dotfiles (path assumed by scripts):

mkdir -p ~/dev && git clone <repo> ~/dev/dotfiles && cd ~/dev/dotfiles

Setup order

1. Run the provisioner first (installs system packages, brew/apt/etc.):
   • macOS: ./provisioners/macos-new.sh
   • WSL (Ubuntu): ./provisioners/wsl.sh
   • Debian (legacy): ./provisioners/deb.sh
   • Windows: ./provisioners/win.ps1
2. Then run ./install to wire the dotfiles into ~.
3. macOS only: chsh -s /opt/homebrew/bin/bash and git lfs install.
4. WSL only: finish the Doom Emacs steps printed by wsl.sh (install nerd-icons fonts, copilot-install-server, create GitHub token for magit/forge in ~/.authinfo.gpg).

To see exactly what packages the provisioner installs, read the provisioner script — there's no separate manifest. macos-new.sh is the current macOS reference; macos.sh is kept only as a legacy MacPorts / scientific-stack reference and is not run on new machines.

What ./install does

• linkfiles/.* — symlinks each entry into ~ (so linkfiles/.bashrc → ~/.bashrc, linkfiles/.config → ~/.config, etc.). Skips if the target exists; pass -f to force-overwrite.
• copyfiles/.* — copies into ~ (not symlinks). Use this for files that will accumulate secrets and must not be version-controlled.
• Runs git submodule update --init and bootstraps vim-plug for vim + neovim.

Re-running is safe; each entry is skip-if-exists unless -f.

Post-install smoke test

After ./install (and a fresh shell), confirm:

• bash --version shows a 5.x from /opt/homebrew/bin/bash on macOS (not /bin/bash).
• which ls grep find point at brew's gnubin dirs on macOS (GNU, not BSD).
• echo $PATH | tr : '\n' | head shows brew / conda / cargo / user ahead of system.
• declare -F | grep -E 'emacsd|nd|dotsource' → functions are loaded.
• emacsd starts a daemon; emc <somefile> attaches a client.
• vim opens and plugins are installed (:PlugStatus).
• tmux starts with the expected keybindings.

Adding a new machine

1. scutil --get ComputerName (macOS) or hostname -s (Linux/WSL).
2. Create bashfuncs/<hostname> for host-specific init (conda path, nvm, welcome banner, etc.). Generic/portable things belong in a regular bashfuncs/<feature> module, not in the per-host file.
3. Add an elif [ "$COMPUTERNAME" = "<hostname>" ] branch in bashfuncs/macos (or the Linux/WSL equivalent) that dotsources it.

See CLAUDE.md and bashfuncs/CLAUDE.md for the full map — layout, PATH model, Doom Emacs setup, provisioner differences.

Email (legacy)

Old reason this repo existed. Notes kept for occasional revival.

Install

sudo port -f install neomutt +idn +lmdb +notmuch +ssl
sudo port -f install offlineimap

Configure

Copy .offlineimaprc to the home directory. Replace the <REDACTED> line with a gmail device password.

Export the macOS trust store: Keychain Access → System Roots → Certificates → CMD-A → CMD-SHIFT-E to a single .pem. Place at ~/ca-certs/certs.pem (matches the path in .offlineimaprc).

On Linux, use sslcacertfile = /etc/ssl/certs/ca-certificates.crt instead.

Run offlineimap -o to fetch first time. If you have an offline copy of your mail, rsync that first — far faster than a cold sync. Put offlineimap in cron to restart it on crash (acts as a daemon, so it no-ops if already running).

Utils worth knowing

• pdftotext via brew poppler
• atool (archives), w3m, elinks