OpenOmics / chrom-seek Star 5 Code Issues Pull requests An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq quality-control annotation chip-seq atac-seq bulk cell-free-dna peak-calling differential-accessibility differential-binding Updated Jul 28, 2026 Python
gynecoloji / snakemake_ATACseq Star 1 Code Issues Pull requests End-to-end Snakemake ATAC-seq pipeline (spike-in-free): Bowtie2 → MACS2 → reproducible fixed-width consensus peaks + a self-contained interactive QC report, plus opt-in CTCF-anchored differential openness (DESeq2) and TF footprinting (TOBIAS). Fully containerized (Docker/Apptainer). docker snakemake ngs atac-seq tobias footprinting epigenomics macs2 peak-calling deeptools apptainer differential-accessibility Updated Jul 30, 2026 Python