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he-staining

Here are 3 public repositories matching this topic...

ratschlab / DeepSpotM

Multimodal foundation model predicting transcriptome-wide virtual spatial transcriptomics from histology.

bioinformatics deep-learning cancer gene-expression pytorch medical-imaging transcriptomics histology digital-pathology oncology whole-slide-imaging computational-pathology multimodal spatial-transcriptomics hugging-face foundation-model he-staining virtual-spatial-transcriptomics

Updated Sep 4, 2026
Python

cpathology / NucleiSegHE

H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net

deep-learning whole-slide-imaging computational-pathology biomedical-image-analysis pathology-image nuclei-segmentation pathomics hover-net he-staining

Updated Jul 30, 2024
Python

nttssv / qupath-he-cell-nuclei-detector

QuPath extension for H&E adrenal cortical clear/compact cell and nuclei morphometry.

morphometry histology cell-segmentation digital-pathology pathology computational-pathology nuclei-segmentation qupath he-staining adrenal-cortex adrenocortical clear-cell compact-cell

Updated May 14, 2026
Groovy

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