QTL mapping pipeline (LOD scoring, peak identification) for Palomero et al., "Immune Cell Associations with Cancer Risk", iScience, 2020. Pairs with systematicBNR for pre-processing.
-
Updated
Aug 2, 2026 - R
#
immune-cells
Here are 5 public repositories matching this topic...
Pipeline for regression analysis of immune/stromal cell quantitative trait loci linked to cancer risk. Developed for Palomero, Espín, et al., "Immune Cell Associations with Cancer Risk", iScience, 2020.
-
Updated
Aug 2, 2026 - R
Immune cell population analysis tool for estimating immune cell composition from gene expression data (DEGs or raw counts). Python CLI + web interface for deconvolution, visualization, and Circos plots.
python bioinformatics computational-biology gene-expression data-visualization immunology deconvolution immune-cells
-
Updated
Nov 15, 2025 - Python
Code repository for Pardo-Cea, Farré, Esteve, Palade, Espín, et al. "Biological basis of extensive pleiotropy between blood traits and cancer risk." Genome Medicine, 2024.
-
Updated
Aug 2, 2026 - R
CDA-based immune and tumor-cell feature extraction from melanoma WSI ROIs, with core TIL and peritumoral leukocyte metrics.
digital-pathology whole-slide-imaging cell-detection wsi computational-pathology melanoma spatial-features histopathology qupath tils tumor-infiltrating-lymphocytes pathology-ai immune-cells
-
Updated
Jun 4, 2026 - Python
Improve this page
Add a description, image, and links to the immune-cells topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the immune-cells topic, visit your repo's landing page and select "manage topics."