Multimodal datasets, in MuData format
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Jan 13, 2023 - Python
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multiome
Here are 13 public repositories matching this topic...
Pipeline to process sc-ATAC data with pyCistopic
python bioinformatics pipeline nextflow atac-seq single-cell single-cell-atac-seq single-cell-multiomics multiome
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May 23, 2026 - Python
Code for Walker, Saunders, Rai et al., (2021).
gwas rna-seq atac-seq single-cell integrative-analysis codex alpha-cell pancreas wgcna beta-cells islets multiome rfx6
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Feb 2, 2022 - Roff
Official – El Arkhe
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Apr 14, 2026 - CSS
Continuation of a developmental ArchR repo, for chromatin accessibility analysis
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Apr 30, 2026 - R
A nextflow workflow that wraps SAMap
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Jul 24, 2025 - Python
snRNA+snATAC multiome of AD DLPFC microglia — chromVAR motif analysis, WNN integration, peak-to-gene linkage, Monocle3 trajectory | Signac · Seurat · R
bioinformatics r atac-seq single-cell alzheimers-disease epigenomics signac seurat microglia snrna-seq multiome monocle3 snatac-seq chromvar peak-to-gene
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Jun 29, 2026 - R
Multiome (RNA+ATAC from same cell) data generated by Qinyu Zhang in David Bryder's lab. Paper here: https://doi.org/10.7554/eLife.91826.2
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Mar 4, 2024 - Python
10x multiome sequencing of 3 independent differentiations of stem-cells to pancreatic islets
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Jun 11, 2026 - Jupyter Notebook
WDLized Cell Ranger ARC
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Nov 10, 2021 - WDL
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