A Nextflow pipeline for end-to-end long-read proteogenomics analysis

Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.

LLM Agent–Driven ncRNA Design via Intrinsic Features and Structure-Guided Feedback

Comprehensive chimeric RNA detection pipeline for Nanopore/PacBio long-read sequencing. Integrates three fusion detection tools (LongGF, Genion, JaffaL) with advanced exon repair validation for high-confidence molecular-level results.

Computational biology toolkit for FASTA-based nucleotide sequence analysis using Biopython, featuring sequence validation, compositional analysis, transcription, translation, ORF detection, restriction site mapping, and graphical visualization.

A Python toolkit for bioinformatics, featuring scripts and projects for DNA/RNA analysis, structural modeling, and classic computational biology challenges (e.g., Rosalind problems).