venkatachalamlab
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LarvaPickerRobot
LarvaPickerRobot PublicSoftware drivers and analysis tools for the Larva Picker Robot.
Python 2
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OpenAutoScope-v2
OpenAutoScope-v2 Public🔬 The OpenAutoScope-v2 is a compact dual-channel microscope engineered to enable precise tracking of single nematodes (*C. elegans*) and facilitate optogenetic experiments. This imaging system allo…
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LarvaRetrieverSW
LarvaRetrieverSW PublicForked from FlySorterLLC/LarvaRetrieverSW
Software and configuration info for larva picker robot
Python
Repositories
- whole-brain-chemosensory-responses Public
Code associated with "Whole-brain chemosensory responses of both C. elegans sexes" (https://doi.org/10.1101/2025.05.15.654129)
- Yeon-2025-pumping-analysis Public
Scripts to quantify pumping frequency in "An enteric neuron-expressed ionotropic receptor detects ingested salts to regulate salt stress resistance," Yeon, ..., Sengupta 2025.
- OpenAutoScope-v2 Public
🔬 The OpenAutoScope-v2 is a compact dual-channel microscope engineered to enable precise tracking of single nematodes (*C. elegans*) and facilitate optogenetic experiments. This imaging system allows recording behavior and dynamic fluorescence (e.g. GCaMP).
- Segmentation_GUI Public
The GUI for manual creating and view the segmented neuclei in the multichannel 3D h5 file.
- AnchorGNN Public
- ZephIR_dev Public Forked from venkatachalamlab/ZephIR
ZephIR: multiple object tracking via image registration
- lambda Public
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