bam2bedGraph2

Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing

how it works

dependency

1. gcc
2. make
3. samtools-0.19
4. zlib-1.2.11
5. hiredis

extending program

1. https://github.com/xiongxu/HighPerformanceNGS/blob/master/bam2wig.c
2. https://github.com/xiongxu/HighPerformanceNGS/blob/master/bam2depth.c