Replaces futures-based parallelization with BiocParallel#21
Merged
Conversation
- Replaced apply functions with purrr helpers
- BiocParallel SnowParam usage, simplifying list binding and TSV processing.
- Update DESCRIPTION: add BiocParallel and Biostrings to Imports and remove furrr, future, and future.apply (also remove Biostrings from Suggests).
- Removed the .with_future_plan man page, wrap examples in \dontrun{...}
- fixed .gitignore to match *.Rcheck entries
jananiravi
approved these changes
Apr 25, 2026
Member
jananiravi
left a comment
There was a problem hiding this comment.
@amcim, if you approve my minor updates, you can go ahead and merge. Thanks for this fix -- welcome to amR!
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Description
Calls to futures libraries were changed to appropriate Biocparallel calls to prepare for Bioconductor submission. Output was validated against the previous implementation and results are identical. Runtime is unchanged.
Fixes #14
What kind of change(s) are included?
Checklist
Please ensure that all boxes are checked before indicating that this pull request is ready for review.