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fix: wire DB_HOST/DB_PORT/DB_NAME/DB_USER/DB_PASSWORD into tes service #41

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Merged
man4ish merged 1 commit into from
Aug 12, 2026
Merged

fix: wire DB_HOST/DB_PORT/DB_NAME/DB_USER/DB_PASSWORD into tes service #41

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16 changes: 16 additions & 0 deletions docker-compose.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -101,6 +101,22 @@ services:
SENTRY_RELEASE: "0.7.0"
DOCKER_HOST: unix:///var/run/docker.sock
PYTHONPATH: /workspace/src
# Mode B Phase 1A/1B run_store.py's own DB_* defaults (DB_USER=
# DB_PASSWORD="omnibioai") never matched any real MySQL grant --
# this block was flagged as a known TODO in that PR's own code
# comment ("this repo's own docker-compose environment block still
# needs that same DB_* set added... out of scope for this change")
# and never followed up on, so every real submit() has been
# crashing on RunStore.create()'s MySQL connect this whole time
# (confirmed live: "Access denied for user 'omnibioai'@...").
# Same shared DB, same DB_USER=root/DB_PASSWORD credential every
# other service here already uses -- mirrors workflow-bundles'
# own entry in this file exactly, not a new/guessed credential.
DB_HOST: mysql
DB_PORT: "3306"
DB_NAME: omnibioai
DB_USER: root
DB_PASSWORD: ${MYSQL_ROOT_PASSWORD:-omnibioai}
TOOLSERVER_BASE_URL: http://toolserver:9090
TES_TOOLS: /workspace/configs/tools
TES_SERVERS: /workspace/configs/servers
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