Python toolkit for 2D single-particle tracking (SPT) and reconstruction of super-resolution images.
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May 20, 2025 - Python
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single-molecule-imaging
Here are 24 public repositories matching this topic...
Python toolkit for 2D/3D image processing using CPU or GPU
python gpu registration microscopy deconvolution single-molecule-imaging light-sheet-microcopy single-particle-tracking
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Jul 28, 2026 - Python
Statistical analysis of single molecule trajectories. (NB: The Sojourner.Pro featuring machine learning analysis is in the making, sign up on sojourner website for release: also, I am open for freelancing till the end of the pandemic, checkout the website for details).
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Mar 28, 2021 - R
SEMORE is a multi-layered density-based clustering module to dissect biological assemblies and a morphology fingerprinting module for quantification by multiple geometric and kinetics-based descriptors.
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Sep 16, 2024 - Python
Python algorithms to convert images of beads into positions
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Apr 8, 2026 - Python
Software for automated analysis of single molecule fluorescence and FRET (smFRET) data
markov-model time-series image-processing fluorescence fluorescence-microscopy-imaging smfret single-molecule-imaging fluorescence-microscopy
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May 21, 2026 - MATLAB
MATLAB codes developed in Courtemanche lab at University of Minnesota for automating analysis of actin filament properties from single molecule microscopy images.
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Jun 27, 2025 - MATLAB
Legacy MATLAB code from PhD dissertation work and academic postdoc work
bootstrap monte-carlo-simulation markov-chain-monte-carlo fluorescence-microscopy-imaging atomic-force-microscopy single-molecule-imaging fluorescence-data diffusion-models time-correlated-single-photon least-squares-optimization decay-rates ultrafast-spectroscopy
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Jun 20, 2025 - MATLAB
A GUI application to assist manual object tracking in 2D/3D time-lapse images
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Jul 28, 2026 - Python
A Python application for deep learning-based particle tracking in microscopy images.
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Aug 5, 2026 - Python
A collection of manuals for the software tools used in mechanosensitive ion channel research, single-molecule imaging, and cell biology
documentation imagej microscopy bioimage-analysis research-software single-molecule-imaging napari cellpose mechanobiology piezo1
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Aug 5, 2026
Matlab software for simulation of two-dimensional single particle tracking (SPT) data sets.
single-molecule simulation diffusion single-molecule-imaging single-particle-tracking oligomerization single-molecule-localization
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May 16, 2024 - MATLAB
ParticleTracker is a Python framework for particle detection, localization, and tracking in fluorescence microscopy images
python image-analysis microscopy particle-tracking single-molecule-imaging localization-microscopy fluorescence-microscopy
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Aug 5, 2026 - Python
Colocalization metrics and distances for images or their sparse representations.
metrics julia-language image-processing interaction distance-measures microscopy colocalization single-molecule-imaging colocalisation
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Mar 12, 2025 - Julia
A Python application for analyzing fluorescently-tagged proteins with mixed mobility behaviors in microscopy data
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Apr 8, 2026 - Python
A comprehensive, modular application for analyzing particle trajectories from TIRF microscopy recordings and other single-molecule imaging data.
python image-analysis microscopy diffusion particle-tracking bioimage-analysis single-molecule-imaging single-particle-tracking
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Aug 5, 2026 - Python
A complete end-to-end pipeline for single-molecule FRET trajectory processing, 3-state kinetic modeling with bleaching, global ensemble fitting, bootstrapping, and sensitivity analysis for Hsp90 dynamics.
mathematical-modelling fret ode-model kinetic-modeling smfret single-molecule-imaging hsp90 live-cell-single-molecule-tracking
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May 1, 2026 - Python
A MATLAB suite implementing computer vision pipeline to extract information from the noisy TIRF microscopy data (image stack)
matlab-functions fluorescence-microscopy-imaging dna-barcode single-molecule-imaging temporal-dna-barcodes tirf
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Feb 9, 2020 - MATLAB
Jupyter implementations of various features in the `misloc_package`, predicting mispolarization and mislocalization in plasmon-enhanced single-molecule imaging.
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Aug 4, 2021 - Jupyter Notebook
End-to-end pipeline for stoichiometry determination from single-molecule photobleaching of membrane proteins in plant microsomal fraction.
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Aug 7, 2026 - Python
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